Software

Several software packages were developed in our group in the last years. We started making them available as Open Source. We love to hear your feedback.

Screenshot of Chromatin 3D Visualizer with a link to https://gitlab.com/wedemann-group/chromatin3d-visualizer
Chromatin 3D Visualizer

Chromatin 3D Visualizer is a tool to visualize the results from our chromatin simulations in 3D.

Graphic from NucPosSimulator with a link to http://bioinformatics.hochschule-stralsund.de/nucpos
NucPosSimulator

NucPosSimulator is simulation tool to identify positions of nucleosomes from Next Generation Sequencing data.

Graphic from Exchange Formats with a link to https://github.com/HOSTbioinformatics/ExchangeFormats
Exchange Formats

Definition of exchange formats for coarse grained chromatin simulations based on XML.

SGraphic from CaTSiT with a link to http://bioinformatics.hochschule-stralsund.de/catsit
CaTSiT

CaTSiT (Cancer and Treatments Simulation Tool) is a software for simulating metastatic progression and various different treatments.

Picture of a dice with a link to https://bioinformatics.hochschule-stralsund.de/dice/index.html
Dice

A dice as a simple HTML/PWA showcase.